Published:
October 31, 2025
Last updated:
October 31, 2025
6
min read

Common Parasites in Rabbits: Spotting the Signs for a Healthier Herd

Rabbit parasites can severely impact the pet's health; they cause irritation, weight loss, poor coat condition, and even death in severe cases. External parasites like mites, fleas, and ticks affect the skin and fur, while internal parasites such as coccidia and worms damage the digestive system.

Good hygiene, routine checks, proper nutrition, and timely treatment are key to preventing infestations and keeping rabbits healthy and productive.

Common Parasites in Rabbits

Rabbits are prone to both external and internal parasites, each affecting health, growth, and productivity in different ways. Understanding their symptoms, active seasons, high-risk periods, and transmission methods helps owners manage infestations effectively.

External Parasites in Rabbits

Some of the most common external parasites in rabbits are fur mites, ear mites, blowflies, fleas, lice, and ticks. They cause skin, hair, and ear infections that can reduce the quality of life of the herd. 

Fur Mites

Fur mites are tiny external parasites that live on the surface of the rabbit's fur. They feed on skin debris and oils.

Ear Mites

Ear mites are tiny parasites that live inside a rabbit’s ear canal, feeding on skin debris and causing intense irritation and infection.

Blowflies (Flystrike)

Blowflies cause flystrike, a serious condition where flies lay eggs on the rabbit’s skin or soiled fur. The maggots that hatch feed on tissue, leading to pain, infection, and even death if untreated.

Fleas

Fleas feed on rabbit blood, causing itching, anemia, and skin irritation.

Lice

Lice are small insects that feed on rabbit skin and blood, leading to irritation and poor coat condition.

Ticks

Ticks attach to the skin and feed on blood. They can also potentially transmit diseases and make the animals sicker.

Internal Parasites in Rabbits

Common internal parasites include Encephalitozoon cuniculi, pinworms, tapeworms, stomach worms, and coccidia. These parasites primarily affect the digestive system, kidneys, nervous system, nutrient absorption, and immunity.

Coccidia

Coccidia are microscopic protozoa that infect the intestines, particularly in young rabbits.

Encephalitozoon cuniculi

A microscopic parasite affecting the nervous system and kidneys of rabbits.

Pinworms

Intestinal worms that live in the colon and cecum can cause digestive disturbances.

Tapeworms

Flatworms in the intestines that absorb nutrients and may stunt growth.

Stomach Worms

Small worms inhabiting the stomach that interfere with digestion and nutrient absorption.

Symptoms of Parasites Affect Your Rabbits

Each parasite causes a unique set of symptoms in rabbits. Spotting these signs early helps farmers provide timely treatment and support herd health. The table below summarizes common symptoms of parasites and their effects for quick reference.

Parasite Symptoms in Rabbits Treatment
Mites Hair loss, scabs, flaky or thickened skin, intense itching, restlessness Apply ivermectin or selamectin under veterinary guidance; clean and disinfect cages and bedding
Ear Mites Head shaking, scratching at ears, thick crusts or scabs inside ears, hair loss around ears, foul odor Use ivermectin or selamectin; gently clean ears; treat all rabbits in contact; disinfect housing
Blowflies (Flystrike) Restlessness, foul odor, wet or matted fur near tail, visible maggots, loss of appetite, lethargy Clip and clean affected fur; remove maggots; apply flystrike treatment; keep rabbits clean and dry; use fly repellents in warm months
Fleas Itching, hair loss, red or inflamed skin, restlessness, and anemia Use rabbit-safe flea treatments (never dog or cat products); wash bedding; treat all in-contact animals
Lice Hair loss, scabs, dull coat, scratching, and reduced weight gain Apply topical insecticides approved for rabbits; repeat treatment in 10–14 days; maintain hygiene
Ticks Skin irritation, scabs, anemia, lethargy, and weight loss Remove ticks carefully with tweezers; apply tick preventives; clean and check housing regularly
Coccidia Diarrhea (sometimes bloody), dehydration, poor growth, and lethargy Treat with coccidiostats such as toltrazuril; keep cages clean and dry; avoid overcrowding
Encephalitozoon cuniculi Head tilt, tremors, loss of coordination, and urinary issues Use fenbendazole as prescribed by a vet; maintain good hygiene and stress-free housing
Pinworms Itching around the anus, diarrhea, and poor growth Treat with fenbendazole; clean litter boxes and enclosures thoroughly to prevent reinfection
Tapeworms Poor weight gain, diarrhea, pot-bellied appearance, and segments in feces Deworm with praziquantel; prevent access to intermediate hosts like fleas or contaminated food
Stomach Worms Diarrhea, poor digestion, weight loss, and reduced appetite Treat with benzimidazoles; rotate outdoor runs and avoid grazing on contaminated food

Risk Periods for Parasites in Rabbits

Certain periods and conditions increase the risk of parasite infestations in rabbits. Recognizing these high-risk situations helps owners take preventive measures and protect their rabbits' health.

Young Rabbits (Kits)

Kits have underdeveloped immunity, which makes them more susceptible to both internal and external parasites like coccidia and fur mites.

Pregnant/Lactating Rabbits

Pregnant and lactating does are under physiological stress, which can reduce their resistance to parasites and increase vulnerability.

High-Density Herds

Rabbits kept in crowded pens or hutches are more likely to spread parasites quickly through direct contact or contaminated bedding.

Wet, Warm Seasons

Parasites thrive in warm, humid conditions, making spring and summer high-risk periods for infestations.

Overgrazed or Short Pastures

Overgrazed areas force rabbits to feed close to the ground, increasing the chance of ingesting parasite eggs or larvae.

Introducing New Rabbits

Newly purchased or relocated rabbits can carry parasites that spread quickly if not quarantined and treated before joining the existing group.

Complications from Parasite Infections in Rabbits

Parasite infections in rabbits can lead to a variety of health problems, affecting both growth and overall well-being. The severity often depends on the age and condition of the animal, with young and older rabbits being particularly vulnerable.

Effects on Young Rabbits (Kits)

Kits are especially prone to parasite-related complications due to their underdeveloped immune systems. Infestations can cause:

Effects on Adult and Older Rabbits

In mature or older rabbits, parasite infections may not always be life-threatening but can significantly affect health and productivity. Common complications include:

How to Control Parasites in Rabbits

Effective parasite control in rabbits requires a combination of preventive care, regular monitoring, and targeted treatments. By addressing internal, external, and general control measures, owners can maintain healthy, productive rabbits.

Internal Parasite Control in Rabbits

External Parasite Control in Rabbits

General Parasite Control in Rabbits

Expert Suggestions for Effective Parasite Control in Rabbits

Effective parasite management in rabbits depends on timely intervention, preventive care, and avoiding common mistakes. Here are expert recommendations to keep your rabbits healthy and productive.

Best Time to Deworm

Natural Remedies That Help

Common Mistakes Farmers Make

Signs That Parasite Control Is Working

In rabbits, successful parasite control shows through smooth, clean fur, clear eyes, and increased appetite. You'll notice reduced scratching, normal droppings, and active, social behavior. Healthy growth rates and shiny coats are reliable indicators that internal and external parasites are well managed.

Use FarmKeep for Rabbit Management

Whether you're managing a few rabbits or an entire colony, staying organized is key to healthy, productive animals. That's where FarmKeep, the all-in-one farm management app, helps.

With FarmKeep, you can:

FAQs

How often should I deworm rabbits?

Deworm kits at 4 to 6 weeks and follow a veterinarian-recommended schedule for adults. 

How can I naturally control ticks and flies in rabbits?

The best way to naturally control ticks and flies in rabbits is by keeping their housing clean and dry, using herbal sprays like neem or garlic oil, trimming tall grass, and rotating bedding regularly.

How to protect rabbits during pregnancy from parasites?

Deworm before breeding, provide balanced nutrition, and maintain clean, dry housing to reduce parasite exposure.

What are the common intestinal parasites in rabbits?

The most common internal parasites are coccidia, pinworms, tapeworms, stomach worms, and Encephalitozoon cuniculi.

What are the key symptoms of parasitism in rabbits?

Symptoms of parasitism in rabbits are diarrhea, poor growth, weight loss, lethargy, rough coat, itching, hair loss, and abnormal behaviors like head tilts.

How do I prevent and control parasite outbreaks in rabbits?

To prevent and control parasite outbreaks in rabbits, farmers and pet owners must practice good hygiene, rotational cleaning and grazing, strategic deworming, fecal monitoring, and quarantine new rabbits before introducing them to the herd.